Design · MODEL CONTEXT PROTOCOL
sirusb samtools mcp
A Model Control Protocol implementation for samtools, providing a standardized interface for working with SAM/BAM/CRAM files.
WHAT IT CONNECTS
sirusb samtools mcp 为 AI Agent 提供什么
- View and convert SAM/BAM/CRAM files
- Sort alignment files
- Index BAM/CRAM files
- Generate statistics
- Merge multiple BAM files
- Calculate read depth
- Index FASTA files
- And more...
- **File Format Support**: Handle SAM (text), BAM (binary), and CRAM (compressed) alignment files
- **Format Conversion**: Convert between SAM, BAM, and CRAM formats seamlessly
- **Region-Specific Analysis**: Extract and analyze specific genomic regions
- **Flag-Based Filtering**: Filter reads based on SAM flags
- **Performance Optimization**: Multi-threaded operations for sorting and merging
- **Statistical Analysis**: Generate comprehensive alignment statistics
- Clone the repository:
- Install dependencies:
- View BAM file:
- Sort BAM file:
- Index BAM file:
- View specific region with flags:
- Sort by read name:
- Calculate depth with multiple input files:
SECURITY
MCP 收录不等于安全审核
MCP 服务器可能获得模型上下文、凭据、本地文件或调用外部系统的权限。连接 Agent 前，请检查代码、环境变量、网络行为、软件包来源与维护状态。